ASCB Rainbow


Subgroup S

Subgroup S: Sharing and Reusing Cell Image Data

1:30 – 5:30 pm, Room 119B
Organizer: Assaf Zaritsky, University of Texas Southwestern Medical Center and the Weizmann Institute of Science

The rapid growth in content and complexity of cell imaging data creates an opportunity for synergy between experimental and computational scientists. Sharing microscopy data enable computational scientists to develop algorithms and tools for data analysis, integration, and mining. These tools can be applied by experimentalists to promote discovery. We are now at the dawn of this revolution: Infrastructure is constantly being developed for data standardization, deposition, sharing, and analysis; journals and funding agencies mandate data deposition; data journals publish high-content microscopy datasets; quantification becomes standard in scientific publications; new analytic tools are being developed and dispatched to the community. This subgroup will bring together scientists to reflect on opening cell imaging data and the opportunities that will come along with it.

Presentations:

1:30-1:40 pm- Introduction. Assaf Zaritsky, University of Texas Southwestern Medical Center and The Weizmann Institute of Science
1:40-2:00 pm- Research parasites? Research symbionts? But I just want to do my research! Casey Greene, University of Pennsylvania
2:00-2:20 pm- An open data exchange ecosystem for cell migration data. Lennart Martens, Ghent University
2:20-2:40 pm- Using (and reusing) experimental data in computational models. Paul Macklin, Indiana University
2:40-3:00 pm- The Image Data Resource: a platform for publishing, integrating and mining biological imaging data at scale. Jason Swedlow, University of Dundee
3:00-3:30 pm- Coffee break
3:30-4:10 pm- Editor Panel on sharing and reusing cell imaging data. Laurie Goodman, GigaScience; Emma Ganley, PLoS Biology; Quincey Justman, Cell SystemsThomas Lemberger, Molecular Systems Biology; and Marie Bao, Developmental Cell
4:10-4:30 pm- The Allen Institute for Cell Science: Building tools and sharing data to empower the scientific community. Winfried Wiegrabe, Allen Institute of Cell Science
4:30-4:50 pm- Integrating information from diverse microscope images: learning and using generative models of cell organization. Robert F. Murphy, Carnegie Mellon University
4:50-5:10 pm- Quantitative functional imaging of cell adhesion and migration. Benny Geiger, The Weizmann Institute of Science
5:10-5:30 pm- Discussion: barriers and solution for image data share and reuse in cell biology

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